Comparative phylogeography of bamboo bats of the genus Tylonycteris (Chiroptera, Vespertilionidae) in Southeast Asia
Abstract
References
An Z., Kutzbach J.E., Prell W.L. & Porter S.C. 2001. Evolution of Asian monsoons and phased uplift of the Himalaya–Tibetan plateau since Late Miocene times. Nature 411 (6833): 62–66. http://dx.doi.org/10.1038/35075035
Arbogast B.S. & Slowinski J.B. 1998. Pleistocene speciation and the mitochondrial DNA clock. Science 282 (5396): e1955. http://dx.doi.org/10.1126/science.282.5396.1955a
Avise J.C. 2000. Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
Ballard J.W.O. & Whitlock M.C. 2004. The incomplete natural history of mitochondria. Molecular Ecology 13 (4): 729–744. http://dx.doi.org/10.1046/j.1365-294X.2003.02063.x
Barlow K.E., Jones G. & Barratt E.M. 1997. Can skull morphology be used to predict ecological relationships between bat species? A test using two cryptic species of pipistrelle. Proceedings of the Royal Society B 264 (1388): 1695–1700. http://dx.doi.org/10.1098/rspb.1997.0235
Bates P., Francis C., Rosell-Ambal G., Heaney L., Molur S. & Srinivasulu C. 2008a. Tylonycteris pachypus. The IUCN Red List of Threatened Species 2008: e.T22577A9377719. http://dx.doi.org/10.2305/IUCN.UK.2008.RLTS.T22577A9377719.en
Bates P., Francis C., Rosell-Ambal G. & Heaney L. 2008b. Tylonycteris robustula. The IUCN Red List of Threatened Species 2008: e.T22578A9378011. http://dx.doi.org/10.2305/IUCN.UK.2008.RLTS.T22578A9378011.en
Borisenko A.V. & Kruskop S.V. 2003. Bats of Vietnam and Adjacent Territories: An Identification Manual. Geos, Moscow.
Bystriakova N., Kapos V., Lysenko I. & Stapleton C.M.A. 2003a. Distribution and conservation status of forest bamboo biodiversity in the Asia-Pacific Region. Biodiversity and Conservation 12 (9): 1833–1841. http://dx.doi.org/10.1023/A:1024139813651
Bystriakova N., Kapos V., Stapleton C. & Lysenko I. 2003b. Bamboo Biodiversity: Information for Planning Conservation and Management in the Asia-Pacific Region. UNEP-WCMC, INBAR, Cambridge, U.K.
Castella V., Ruedi M. & Excoffier L. 2001. Contrasted patterns of mitochondrial and nuclear structure among nursery colonies of the bat Myotis myotis. Journal of Evolutionary Biology 14 (5): 708–720. http://dx.doi.org/10.1046/j.1420-9101.2001.00331.x
Corbet G.B. & Hill J.E. 1992. The Mammals of the Indomalayan Region: A Systematic Review. Natural History Museum, London and Oxford University Press, Oxford.
Drummond A.J., Suchard M.A., Xie D. & Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969–1973. http://dx.doi.org/10.1093/molbev/mss075
Feng Q., Li S. & Wang Y. 2008. A new species of bamboo bat (Chiroptera: Vespertilionidae: Tylonycteris) from Southwestern China. Zoological Science 25 (2): 225–234. http://dx.doi.org/10.2108/zsj.25.225
Flanders J., Wei L., Rossiter S.J. & Zhang S. 2011. Identifying the effects of the Pleistocene on the greater horseshoe bat, Rhinolophus ferrumequinum, in East Asia using ecological niche modelling and phylogenetic analyses. Journal of Biogeography 38 (3): 439–452. http://dx.doi.org/10.1111/j.1365-2699.2010.02411.x
Francis C.M. 2008. A Field Guide to the Mammals of South-East Asia. New Holland Publishers, London.
Francis C.M., Borisenko A.V., Ivanova N.V., Eger J.L., Lim B.K., Guillén-Servent A., Kruskop S.V., Mackie I. & Hebert P.D.N. 2010. The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia. PLoS ONE 5 (9): e12575. http://dx.doi.org/10.1371/journal.pone.0012575
Hammer Ø., Harper D.A.T. & Ryan P.D. 2001. PAST: Paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4 (1): e4. Available from http://palaeo-electronica.org/2001_1/past/issue1_01.htm [accessed 12 Dec. 2016].
Hassanin A. & Ropiquet A. 2007. Resolving a zoological mystery: the kouprey is a real species. Proceedings of the Royal Society B 274 (1627): 2849–2855. http://dx.doi.org/10.1098/rspb.2007.0830
Hassanin A., Delsuc F., Ropiquet A., Hammer C., Jansen van Vuuren B., Matthee C., Ruiz-Garcia M., Catzeflis F., Areskoug V., Nguyen T.T. & Couloux A. 2012. Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. Comptes Rendus Biologies 335 (1): 32–50. http://dx.doi.org/10.1016/j.crvi.2011.11.002
Hassanin A., An J., Ropiquet A., Nguyen T.T. & Couloux A. 2013. Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: Application to the tribe Bovini (Cetartiodactyla, Bovidae). Molecular Phylogenetics and Evolution 66 (3): 766–775. http://dx.doi.org/10.1016/j.ympev.2012.11.003
Hassanin A., Khouider S., Gembu G.-C., Goodman S.M., Kadjo B., Nesi N., Pourrut X., Nakouné E. & Bonillo C. 2015. The comparative phylogeography of fruit bats of the tribe Scotonycterini (Chiroptera, Pteropodidae) reveals cryptic species diversity related to African Pleistocene forest refugia. Comptes Rendus Biologies 338 (3): 197–211. http://dx.doi.org/10.1016/j.crvi.2014.12.003
Hendrichsen D.K., Bates P.J.J., Hayes B.D. & Walston J.L. 2001. Recent records of bats (Mammalia: Chiroptera) from Vietnam with six species new to the country. Myotis 39: 35–122.
Hua P., Zhang L., Zhu G., Jones G., Zhang S. & Rossiter S.J. 2011. Hierarchical polygyny in multiparous lesser flat-headed bats. Molecular Ecology 20 (17): 3669–3680. http://dx.doi.org/10.1111/j.1365-294X.2011.05192.x
Hua P., Zhang L., Guo T., Flanders J. & Zhang S. 2013. Dispersal, mating events and fine-scale genetic structure in the lesser flat-headed bats. PLoS ONE 8 (1): e54428. http://dx.doi.org/10.1371/journal.pone.0054428
Huang C., Yu W., Xu Z., Qiu Y., Chen M., Qiu B., Motokawa M., Harada M., Li Y. & Wu Y. 2014. A cryptic species of the Tylonycteris pachypus complex (Chiroptera: Vespertilionidae) and its population genetic structure in southern China and nearby regions. International Journal of Biological Sciences
(2): 200–211. http://dx.doi.org/10.7150/ijbs.7301
Hulva P., Fornŭsková A., Chudárková A., Evin A., Allegrini B., Benda P. & Bryja J. 2010. Mechanisms of radiation in a bat group from the genus Pipistrellus inferred by phylogeography, demography and population genetics. Molecular Ecology 19 (24): 5417–5431. http://dx.doi.org/10.1111/j.1365-294X.2010.04899.x
Inger R.F. & Voris H.K. 2001. The biogeographical relations of the frogs and snakes of Sundaland. Journal of Biogeography 28 (7): 863–891. http://dx.doi.org/10.1046/j.1365-2699.2001.00580.x
Jones K.E., Purvis A., MacLarnon A., Bininda-Emonds O.R.P. & Simmons N.B. 2002. A phylogenetic supertree of the bats (Mammalia: Chiroptera). Biological Reviews 77 (2): 223–259. http://dx.doi.org/10.1017/S1464793101005899
Jungers W.L., Falsetti A.B. & Wall C.E. 1995. Shape, relative size, and size-adjustments in morphometrics. American Journal of Physical Anthropology 38 (S21): 137–161. http://dx.doi.org/10.1002/ajpa.1330380608
Khan F.A.A., Solari S., Swier V.J., Larsen P.A., Abdullah M.T. & Baker R.J. 2010. Systematics of Malaysian woolly bats (Vespertilionidae: Kerivoula) inferred from mitochondrial, nuclear, karyotypic, and morphological data. Journal of Mammalogy 91 (5): 1058–1072. http://dx.doi.org/10.1644/09-MAMM-A-361.1
Kingston T. 2010. Research priorities for bat conservation in Southeast Asia: a consensus approach. Biodiversity and Conservation 19 (2): 471–484. http://dx.doi.org/10.1007/s10531-008-9458-5
Kruskop S.V. 2013. Bats of Vietnam: Checklist and an Identification Manual. KMK Sci Press, Moscow.
Kunz T.H. 1982. Roosting ecology of bats. In: Kunz T.H. (ed.) Ecology of Bats: 1–55. Springer, New York.
Lande R. & Barrowclough G. 1987. Effective population size, genetic variation, and their use in population management. In: Soulé M.E. (ed.) Viable Populations for Conservation: 87–124. Cambridge University Press, London.
Lin A.Q., Csorba G., Li L.F., Jiang T.L., Lu G.J., Thong V.D., Soisook P., Sun K.P. & Feng J. 2014. Phylogeography of Hipposideros armiger (Chiroptera: Hipposideridae) in the Oriental Region: the contribution of multiple Pleistocene glacial refugia and intrinsic factors to contemporary population genetic structure. Journal of Biogeography 41 (2): 317–327. http://dx.doi.org/10.1111/jbi.12163
Lindenfors P., Gittleman J.L. & Jones K.E. 2007. Sexual size dimorphism in mammals. In: Fairbairn D.J., Blanckenhorn W.U. & Székely T. (eds) Sex, Size and Gender Roles: Evolutionary Studies of Sexual Size Dimorphism: 16–26. Oxford University Press, Oxford.
Mao X.G., Zhu G.J., Zhang S. & Rossiter S.J. 2010. Pleistocene climatic cycling drives intra-specific diversification in the intermediate horseshoe bat (Rhinolophus affinis) in Southern China. Molecular Ecology 19 (13): 2754–2769. http://dx.doi.org/10.1111/j.1365-294X.2010.04704.x
Mao X.G., He G.M., Zhang J.P., Rossiter S.J. & Zhang S.Y. 2013. Lineage divergence and historical gene flow in the Chinese horseshoe bat (Rhinolophus sinicus). PLoS ONE 8 (2): e56786. http://dx.doi.org/10.1371/journal.pone.0056786
Medway L. 1972. Reproductive cycles of the flat-headed bats Tylonycteris pachypus and T. robustula (Chiroptera: Vespertilioninae) in a humid equatorial environment. Zoological Journal of the Linnean Society 51 (1): 33–61. http://dx.doi.org/10.1111/j.1096-3642.1972.tb00772.x
Medway L. 1973. The taxonomic status of Tylonycteris malayana Chasen 1940 (Chiroptera). Journal of Natural History 7 (2): 125–131. http://dx.doi.org/10.1080/00222937300770111
Medway L. & Marshall A.G. 1970. Roost-site selection among flat-headed bats (Tylonycteris spp.). Journal of Zoology 161 (2): 237–245. http://dx.doi.org/10.1111/j.1469-7998.1970.tb02038.x
Medway L. & Marshall A.G. 1972. Roosting associations of flat-headed bats, Tylonycteris species (Chiroptera: Vespertilionidae) in Malaysia. Journal of Zoology 168 (4): 463–482. http://dx.doi.org/10.1111/j.1469-7998.1972.tb01362.x
Meijaard E. & Groves C.P. 2006. The geography of mammals and rivers in mainland Southeast Asia. In: Lehman S.M. & Fleagle J.G. (eds) Primate Biogeography: 305–329. Springer, New York.
Morley R.J. 2000. Origin and Evolution of Tropical Rain Forests. John Wiley & Sons, Chichester, U.K.
Nesi N., Nakouné E., Cruaud C. & Hassanin A. 2011. DNA barcoding of African fruit bats (Mammalia, Pteropodidae). The mitochondrial genome does not provide a reliable discrimination between Epomophorus gambianus and Micropteropus pusillus. Comptes Rendus Biologies 334 (7): 544–554. http://dx.doi.org/10.1016/j.crvi.2011.05.003
Nesi N., Kadjo B., Pourrut X., Leroy E., Pongombo Shongo C., Cruaud C. & Hassanin A. 2013. Molecular systematics and phylogeography of the tribe Myonycterini (Mammalia, Pteropodidae) inferred from mitochondrial and nuclear markers. Molecular Phylogenetics and Evolution 66 (1): 126–137. http://dx.doi.org/10.1016/j.ympev.2012.09.028
Osgood W.H. 1932. Mammals of the Kelley-Roosevelts and Delacour Asiatic expedition. Field Museum of Natural History, Zoological Series 18: 193–339. Available from http://dx.doi.org/10.5962/bhl.title.2798 [accessed 12 Dec. 2016].
Pereira M.J.R., Salgueiro P., Rodrigues L., Coelho M.M. & Palmeirim J.M. 2009. Population structure of a cave-dwelling bat, Miniopterus schreibersii: Does it reflect history and social organization? Journal of Heredity 100 (5): 533–544. http://dx.doi.org/10.1093/jhered/esp032
Posada D. 2008. jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution 25 (7): 1253–1256. http://dx.doi.org/10.1093/molbev/msn083
Rambaut A. 2002. Sequence Alignment Editor, v. 2.0 alpha 11. Available from http://evolve.zoo.ox.ac.uk/ [accessed 12 Dec. 2016]
Rambaut A. 2009. FigTree, v. 1.4.0, 2006–2012. Available from http://tree.bio.ed.ac.uk/software/figtree/ [accessed 12 Dec. 2016].
Rivers N.M., Butlin R.K. & Altringham J.D. 2005. Genetic population structure of Natterer’s bats explained by mating at swarming sites and philopatry. Molecular Ecology 14 (14): 4299–4312. http://dx.doi.org/10.1111/j.1365-294X.2005.02748.x
Roehrs Z.P., Lack J.B. & Van Den Bussche R.A. 2010. Tribal phylogenetic relationships within Vespertilioninae (Chiroptera: Vespertilionidae) based on mitochondrial and nuclear sequence data. Journal of Mammalogy 91 (5): 1073–1092. http://dx.doi.org/10.1644/09-MAMM-A-325.1
Ronquist F., Teslenko M., van der Mark P., Ayres D.L., Darling A., Hohna S., Larget B., Liu L., Suchard M.A. & Huelsenbeck J.P. 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61 (3): 539–542. http://dx.doi.org/10.1093/sysbio/sys029
Ropiquet A., Li B. & Hassanin A. 2009. SuperTRI: A new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences. Comptes Rendus Biologies 332 (9): 832–847. http://dx.doi.org/10.1016/j.crvi.2009.05.001
Ruedi M. & Castella V. 2003. Genetic consequences of the ice ages on nurseries of the bat Myotis myotis: a mitochondrial and nuclear survey. Molecular Ecology 12 (6): 1527–1540. http://dx.doi.org/10.1046/j.1365-294X.2003.01828.x
Shaffer M.L. 1981. Minimum population sizes for species conservation. BioScience 31 (2): 131–134. http://dx.doi.org/10.2307/1308256
Simmons N.B. 2005. Order Chiroptera. In: Wilson D.E. & Reeder D.M. (eds) Mammal Species of the World: A Taxonomic and Geographic Reference: 312–529. Johns Hopkins University Press, London.
Sodhi N.S., Posa M.R.C., Lee T.M., Bickford D., Koh L.P. & Brook B.W. 2010. The state and conservation of Southeast Asian biodiversity. Biodiversity and Conservation 19 (2): 317–328. http://dx.doi.org/10.1007/s10531-009-9607-5
Swofford D.L. 2003. PAUP*: Phylogenetic Analysis Using Parsimony (*and other methods), v. 4. Sinauer Associates, Sunderland, Massachusetts.
Thewissen J.G.M. & Etnier S.A. 1995. Adhesive devices on the thumb of vespertilionoid bats (Chiroptera). Journal of Mammalogy 76 (3): 925–936. http://dx.doi.org/10.2307/1382762
Thomas N.M., Duckworth J.W., Douangboubpha B., Williams M. & Francis C.M. 2013. A checklist of bats (Mammalia: Chiroptera) from Lao PDR. Acta Chiropterologica 15 (1): 193–260. http://dx.doi.org/10.3161/150811013X667993
Tordoff A.W., Bezuijen M.R., Duckworth J.W., Fellowes J.R., Koenig K., Pollard E.H.B. & Royo A.G. 2012. Ecosystem Profile: Indo-Burma Biodiversity Hotspot Indochina Region. Final Version October 2012. Critical Ecosystem Partnership Fund, Conservation International, USA.
Voris H.K. 2000. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. Journal of Biogeography 27 (5): 1153–1167. http://dx.doi.org/10.1046/j.1365-2699.2000.00489.x
Woodruff D.S. 2010. Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today’s patterns and the future of the remaining refugial-phase biodiversity. Biodiversity and Conservation 19 (4): 919–941. http://dx.doi.org/10.1007/s10531-010-9783-3
Yuming Y., Kanglin W., Shengji P. & Jiming H. 2004. Bamboo diversity and traditional uses in Yunnan, China. Mountain Research and Development 24 (2): 157–165. http://dx.doi.org/10.1659/0276-4741(2004)024[0157:BDATUI]2.0.CO;2
Zar J.H. 1999. Biostatistical Analysis, fourth edition. Upper Saddle River, Prentice Hall, New Jersey.
Zhang L., Liang B., Parsons S., Wei L. & Zhang S. 2007. Morphology, echolocation and foraging behaviour in two sympatric sibling species of bat (Tylonycteris pachypus and Tylonycteris robustula) (Chiroptera: Vespertilionidae). Journal of Zoology 271 (3): 344–351. http://dx.doi.org/10.1111/j.1469-7998.2006.00210.x
Zhang L.B., Liang B., Zhou S.Y., Lu L.R. & Zhang S.Y. 2004. Group structure of lesser flat-headed bat Tylonycteris pachypus and greater flat-headed bat T. robustula. Acta Zoologica Sinica 50 (3): 326–333.
Zhang L.B., Jones G., Rossiter S., Ades G., Liang B. & Zhang S.Y. 2005. Diet of flat-headed bats, Tylonycteris pachypus and T. robustula, in Guangxi, South China. Journal of Mammalogy 86 (1): 61–66. http://dx.doi.org/10.1644/1545-1542(2005)086<0061:DOFBTP>2.0.CO;2
Creative Commons Copyright Notices
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License (CC BY 4.0) that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are NOT ALLOWED TO post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to taxonomic issues.