A new minute species of Pristimantis (Amphibia: Anura: Craugastoridae) with a large head from the Yanachaga-Chemillén National Park in central Peru, with comments on the phylogenetic diversity of Pristimantis occurring in the Cordillera Yanachaga
Abstract
References
Altschul S.F., Gish W., Miller W., Myers E.W. & Lipman D.J. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. https://doi.org/10.1016/S0022-2836(05)80360-2
AmphibiaWeb: Information on amphibian biology and conservation. [web application]. 2017. Berkeley, California: AmphibiaWeb. Available from http://amphibiaweb.org/ [accessed 13 May 2017].
Angulo A., von May R., Icochea J., Chaparro J.C., Hedges B., Lehr E., López D.G., Lundberg M. & Moravec J. 2016. Parque Nacional Yanachaga-Chemillén, Pasco, Perú. Anfibios del bosque de nubes y su zona de amortiguamiento. Field Guides 738: 1–6.
Boulenger G.A. 1918. Descriptions of new South-American batrachians. Annals and Magazines of Natural History, Series 9 2: 427–433. https://doi.org/10.1080/00222931808673782
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540–552. https://doi.org/10.1093/oxfordjournals.molbev.a026334
Clarke B.T. 1996. Small size in amphibians: its ecological and evolutionary implications. Symposia of the Zoological Society of London 69: 201–224.
Darriba D., Taboada G.L., Doallo R. & Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. https://doi.org/10.1038/nmeth.2109
Duellman W.E. 1978. Three new species of Eleutherodactylus from Amazonian Perú (Amphibia: Anura: Leptodactylidae). Herpetologica 34: 264–270.
Duellman W.E. 2005. Cuzco Amazonico: the Lives of Amphibians and Reptiles in an Amazonian Rainforest. Cornell University Press, Ithaca, New York.
Duellman W.E. & Hedges S.B. 2005. Eleutherodactyline frogs (Anura: Leptodactylidae) from the Cordillera Yanachaga in Central Peru. Copeia 2005: 526–538. https://doi.org/10.1643/CH-05-019R
Duellman W.E. & Hedges S.B. 2007. Three new species of Pristimantis (Lissamphibia, Anura) from montane forests of the Cordillera Yanachaga in Central Peru. Phyllomedusa 6: 119–135. https://doi.org/10.11606/issn.2316-9079.v6i2p119-135
Duellman W.E. & Lehr E. 2009. Terrestrial-breeding Frogs (Strabomantidae) in Peru. Natur und Tier-Verlag, Münster.
Guindon S. & Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum-likelihood. Systematic Biology 52: 696–704. https://doi.org/10.1080/10635150390235520
Hedges S.B., Duellman W.E. & Heinicke H. 2008. New world direct-developing frogs (Anura: Terrarana): molecular phylogeny, classification, biogeography, and conservation. Zootaxa 1737: 1–182.
Heinicke M.P., Duellman W.E., Trueb L., Means D.B., MacCulloch R.D. & Hedges S.B. 2009. A new frog family (Anura: Terrarana) from South America and an expanded direct-developing clade revealed by molecular phylogeny. Zootaxa 2211: 1–35.
Huelsenbeck J.P. & Rannala B. 2004. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Systematic Biology 53: 904–913. https://doi.org/10.1080/10635150490522629
IUCN Standards and Petitions Subcommittee. 2016. Guidelines for using the IUCN Red List categories and criteria. Version 12. Prepared by the Standards and Petitions Subcommittee. Available from http://www.iucnredlist.org/documents/RedListGuidelines.pdf [accessed 27 Apr. 2017].
Katoh K. & Standley D.M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010
Köhler J. & Lötters S. 1999. New species of the Eleutherodactylus unistrigatus group (Amphibia: Anura: Leptodactylidae) from montane rain forest of Bolivia. Copeia 1999: 422–427. https://doi.org/10.2307/1447487
Lehr E. & Coloma L.A. 2008. A minute new Ecuadorian Andean frog (Anura: Strabomantidae, Pristimantis). Herpetologica 64: 354–367. https://doi.org/10.1655/07-089.1
Lehr E. & Duellman W.E. 2007. A diminutive new species of Pristimantis (Amphibia: Anura: Leptodactylidae) from northern Peru. Salamandra 43: 165–171.
Lehr E., Lundberg M., Aguilar C. & von May R. 2006. New species of Eleutherodactylus (Anura: Leptodactylidae) from the eastern Andes of central Peru with comments on central Peruvian Eleutherodactylus. Herpetological Monographs 20:105–128.
Lehr E., Aguilar C., Siu-Ting K. & Jordán J.C. 2007. Three new species of Pristimantis (Anura: Leptodactylidae) from the Cordillera de Huancabamba in northern Peru. Herpetologica 63: 519–536. https://doi.org/10.1655/0018-0831(2007)63%5B519:TNSOPA%5D2.0.CO;2
Lynch J.D. 1968. Two new frogs of the genus Eleutherodactylus from eastern Ecuador (Amphibia: Leptodactylidae). Journal of Herpetology 2: 129–135. https://doi.org/10.2307/1563112
Lynch J.D. 1980. A taxonomic and distributional synopsis of the Amazonian frogs of the genus Eleutherodactylus. American Museum Novitates 2696: 1–24.
Lynch J.D. & Duellman W.E. 1980. The Eleutherodactylus of the Amazonian slopes of the Ecuadorian Andes (Anura: Leptodactylidae). Miscellaneous Publication of the Museum of Natural History, University of Kansas 69: 1–86.
Lynch J.D. & Duellman W.E. 1997. Frogs of the genus Eleutherodactylus in western Ecuador: systematics, ecology, and biogeography. Special Publication of the Natural History Museum, University of Kansas 23: 1–236.
Moravec J., Aparicio J., Guerrero-Reinhard M., Calderón G., Jungfer K.-H. & Gvoždík V. 2009. A new species of Osteocephalus (Anura: Hylidae) from Amazonian Bolivia: first evidence of tree frog breeding in fruit capsules of the Brazil nut tree. Zootaxa 2215: 37–54.
Morgulis A., Coulouris, G., Raytselis Y., Madden T.L., Agarwala R. & Schäffer A.A. 2008. Database indexing for production MegaBLAST searches. Bioinformatics 24: 1757–1764. https://doi.org/10.1093/bioinformatics/btn322
Padial J.M., Grant T. & Frost D.R. 2014. Molecular systematics of terraranas (Anura: Brachycepha-loidea) with an assessment of the effects of alignment and optimality criteria. Zootaxa 3825: 1–132. https://doi.org/10.11646/zootaxa.3825.1.1
Palumbi S., Martin A., Romano S., McMillan W.O., Stice L. & Grabowski G. 1991. The Simple Fool’s Guide to PCR. Version 2. University of Hawaii, Honolulu.
Pyron R.A. & Wiens J.J. 2011. A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Molecular Phylogenetics and Evolution 61: 543–583. https://doi.org/10.1016/j.ympev.2011.06.012
Rambaut A., Suchard M.A., Xie W. & Drummond A.J. 2013. Tracer. MCMC Trace Analysis Tool Version v1.6.0. Available from http://tree.bio.ed.ac.uk/software/tracer/ [accessed 27 Apr. 2017].
Ron S.R., Guayasamin J.M., Yanez-Muñoz M.H., Merino-Viteri A., Ortiz D.A. & Nicolalde D.A. 2017. AmphibiaWebEcuador. Version 2017.0. Museo de Zoología, Pontificia Universidad Católica del Ecuador. Available from http://zoologia.puce.edu.ec/Vertebrados/anfibios [accessed 13 May 2017].
Ronquist F., Teslenko M., Van Der Mark P., Ayres D.L., Darling A., Höhna S., Larget B., Liu L., Suchard M.A. & Huelsenbeck J.P. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539–542. https://doi.org/10.1093/sysbio/sys029
Sernanp. 2010. Guía Oficial De Áreas Naturales Protegidas Del Perú. Lima, Peru.
Swofford D.L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
Terán-Valdez A. & Guayasamin J.M. 2010. The smallest terrestrial vertebrate of Ecuador: A new frog of the genus Pristimantis (Amphibia: Strabomantidae) from the Cordillera del Cóndor. Zootaxa 2447: 53–68.
Vences M., Nagy Z.T., Sonet G. & Verheyen E. 2012. DNA barcoding amphibians and reptiles. In: Kress W.J. & Erickson D.L. (eds) DNA Barcodes: Methods and Protocols. Methods in Molecular Biology 858: 79–107. Humana Press, New York. https://doi.org/10.1007/978-1-61779-591-6_5
Wells K. 2007. The Ecology and Behaviour of Amphibians. The University of Chicago Press, Chicago, London.
Yallico L.A. & Rose D.A. 1998. 12. Peru: Yanachaga-Chemillén National Park. In: Brandon, K., Redford K.H. & Sanderson S.E. (eds) Parks in Peril. People, Politics, and Protected Areas. Island Press, The Nature Conservancy, Washington, DC: 353–371.
Yeh J. 2002. The effect of miniaturized body size on skeletal morphology of frogs. Evolution 56: 628–641. https://doi.org/10.1111/j.0014-3820.2002.tb01372.x
Zhang Z., Schwartz S., Wagner L. & Miller W. 2000. A greedy algorithm for aligning DNA sequences. Journal of Computational Biology 7: 203–214. https://doi.org/10.1089/10665270050081478
Zimkus B.M., Lawson L., Loader S.P. & Hanken J. 2012. Terrestrialization, miniaturization and rates of diversification in African puddle frogs (Anura: Phrynobatrachidae). PLoS ONE 7(4): e35118: 1–11. https://doi.org/10.1371/journal.pone.0035118
Creative Commons Copyright Notices
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License (CC BY 4.0) that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are NOT ALLOWED TO post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to taxonomic issues.