Revision of the genus Cobbionema Filipjev, 1922 (Nematoda, Chromadorida, Selachinematidae)

  • Mohammed Ahmed Department of Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm http://orcid.org/0000-0002-9966-3431
  • Sven Boström Department of Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm
  • Oleksandr Holovachov Department of Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm
Keywords: west coast of Sweden, marine nematodes, predatory, stoma, phylogeny

Abstract

This paper reports on the genus Cobbionema Filipjev, 1922 in Sweden with the description of four species and a revision of the genus. Cobbionema acrocerca Filipjev, 1922 is relatively small in size, with a tail that has a conical proximal and a digitate distal section. Cobbionema cylindrolaimoides Schuurmans Stekhoven, 1950 is similar to C. acrocerca in most characters except having a larger body size and heavily cuticularized mandibles. Cobbionema brevispicula sp. nov. is characterised by short spicules and a conoid tail. Cobbionema acuminata sp. nov. is characterised by a long two-part spicule, a conical tail and three (one mid dorsal and two ventrosublateral) sharply pointed tines in the anterior chamber of the stoma that are located more anterior than in all the other species. We also present a molecular phylogeny of the family based on the nearly full-length 18S and the D2-D3 expansion segment of the 28S rRNA genes. Maximum Likelihood and Bayesian trees inferred from both genes strongly support a clade that included Cobbionema, Demonema Cobb, 1894 and Halichoanolaimus de Man, 1888 and another clade with Gammanema Cobb, 1920 and Latronema Wieser, 1954 nested together. None of the trees supported the monophyly of the subfamilies Choniolaiminae and Selachinematinae.

References

Allgén C.A. 1934. Weitere Nematoden aus dem Öresund. Folia Zoologica et Hydrobiologica 7: 97–110.

Allgén C.A. 1940. Über enige norwegische marine Tiefen-Nematoden. Folia Zoologica et Hydrobiologica 10: 258–281.

Allgén C.A. 1953. Revision der freilebenden marinen Nematoden aus der Umgebung der Staatlichen Zoologischen Station Kristeneberg an der Weskuste Schwedens. Zoologische Jahrbücher. Abteilung für Systematik, Ökologie und Geographie der Tiere 81: 548–603.

Bastian H.C. 1865. Monograph of the Anguillulidae, or Free Nematoids, Marine, Land, and Freshwater; with Descriptions of 100 New Species. The Transactions of the Linnean Society of London, vol. 25. https://doi.org/10.5962/bhl.title.14153

Bell T. & Kramvis A. 2013. Fragment merger: an online tool to merge overlapping long sequence fragments. Viruses 5 (3): 824–833. https://doi.org/10.3390/v5030824

Belogurov N.P. & Fadeeva O.I. 1980. Notes on the genus Halichoanolaimus (Nematoda, Choanolaimidae) with the description of two new species. Zoologicheskii Zhurnal 59 (5): 656–665.

Benson D.A., Cavanaugh M., Clark K., Karsch-Mizrachi I., Ostell J., Pruitt K.D. & Sayers E.W. 2018. GenBank. Nucleic Acids Research 46 (D1): D41–D47. https://doi.org/10.1093/nar/gkx1094

Bezerra T.N., Decraemer W., Eisendle-Flöckner U., Hodda M., Holovachov O., Leduc D., Miljutin D., Mokievsky V., Peña Santiago R., Sharma J., Smol N., Tchesunov A., Venekey V., Zhao Z. & Vanreusel A. 2020. Nemys: World Database of Nematodes. Available from http://nemys.ugent.be [accessed 4 Mar. 2020]. https://doi.org/10.14284/366

De Grisse A.T. 1969. Redescription ou modification de quelques techniques utilisés dans l’étude dęs nématodes phytoparaires. Mededelingen Rijksfakulteit Landbouwwetenschappen Gent 34: 351–369.

Derycke S., Remerie T., Vierstraete A., Backeljau T., Vanfleteren J., Vincx M. & Moens T. 2005. Mitochondrial DNA variation and cryptic speciation within the free-living marine nematode Pellioditis marina. Marine Ecology Progress Series 300: 91–103. https://doi.org/10.3354/meps300091

Derycke S., De Ley P., Tandingan De Ley I., Holovachov O., Rigaux A. & Moens T. 2010. Linking DNA sequences to morphology: cryptic diversity and population genetic structure in the marine nematode Thoracostoma trachygaster (Nematoda, Leptosomatidae). Zoologica Scripta 39 (3): 276–289. https://doi.org/10.1111/j.1463-6409.2009.00420.x

Ditlevsen H. 1918. Marine freeliving nematodes from Danish waters. Videnskabelige Meddelelser fra Dansk naturhistorisk Forening i Kjøbenhavn 7: 147–214.

Filipjev I.N. 1922. New data about free-living nematodes of the Black Sea. Transactions of Stavropol Agricultural Institute 1: 83–42. [In Russian.]

Furstenberg J.P. & Heyns J. 1987. Cobbionema capense n. sp. from Swartkops Estuary, Port Elizabeth (Nematoda: Selachinematidae). Canadian Journal of Zoology 65 (1): 80–82. https://doi.org/10.1139/z87-012

Gerlach S.A. 1956. Diagnosen neuer Nematoden aus der Kieler Bucht. Kieler Meeresforschungen 12: 85–109.

Gerlach S.A. 1964. Revision der Choniolaiminae und Selachinematinae (freilebende Meeres-Nematoden). Mitteilungen aus dem Hamburgischen zoologischen Museum und Institut 61: 23–50.

Gerlach S.A. & Riemann F. 1973. The Bremerhaven checklist of aquatic nematodes. A catalogue of nematoda Adenophorea excluding the Dorylaimida. Veröffentlichungen des Instituts für Meeresforschung in Bremerhaven Supplementband 4: 1–736.

Gowri-Shankar V. & Jow H. 2006. PHASE: a software package for phylogenetics and sequence evolution. Available from http://www.bioinf.man.ac.uk/resources/phase/manual/ [accessed 22 Jul. 2020].

Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium series 41: 95–98.

Hasbrouck E.R. 1966. Halichoanolaimus raritanensis n. sp. (Chromadoroidea: Cyatholaimidae) from New Jersey. Helminthological Society: 23–25.

Higgs P.G. 2000. RNA secondary structure: physical and computational aspects. Quarterly Reviews of Biophysics 33 (3): 199–253. https://doi.org/10.1017/S0033583500003620

Holovachov O., Camp L. & Nadler S.A. 2015. Sensitivity of ribosomal RNA character sampling in the phylogeny of Rhabditida. Journal of Nematology 47 (4): 337–355.

Holovachov O., Haenel Q., Bourlat S.J. & Jondelius U. 2017. Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes. Royal Society Open Science 4 (8): 170315. https://doi.org/10.1098/rsos.170315

Holterman M., van der Wurff A., van den Elsen S., van Megen H., Bongers T., Holovachov O., Bakker J. & Helder J. 2006. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Biology and Evolution 23 (9): 1792–1800. https://doi.org/10.1093/molbev/msl044

Hunt D.J. & Palomares-Rius J.E. 2012. General morphology and morphometries of plant-parasitic nematodes. Practical Plant Nematology: 25–64.

Leduc D. 2013. Two new genera and five new species of Selachinematidae (Nematoda, Chromadorida) from the continental slope of New Zealand. European Journal of Taxonomy 63: 1–32. https://doi.org/10.5852/ejt.2013.63

Maggenti A.R. 2005. Online Dictionary of Invertebrate Zoology. Available from https://digitalcommons.unl.edu/ [accessed 22 Jul. 2020].

Miller M.A., Pfeiffer W. & Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Gateway Computing Environments Workshop (GCE), 2010: 1–8. https://doi.org/10.1109/gce.2010.5676129

Nunn G.B. 1992. Nematode molecular evolution: an investigation of evolutionary patterns among nematodes based upon DNA sequences. Ph.D. Thesis, University of Nottingham, UK.

Schuurmans Stekhoven J.H.J. 1946. Freilebende marine Nematoden des Skagerraks und der Umgebung von Stocklholm. Arkiv för Zoologi 37A (16): 1–91.

Schuurmans Stekhoven J.H.J. 1950. The freeliving marine nemas of the Mediterranean: I. The Bay of Villefranche. Mémoires de l’Institut royal des Sciences naturelles de Belgique, deuxième série 37: 1– 220.

Seibel P.N., Müller T., Dandekar T., Schultz J. & Wolf M. 2006. 4SALE – a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7 (1): 498. https://doi.org/10.1186/1471-2105-7-498

Seinhorst J.W. 1959. A rapid method for the transfer of nematodes from fixative to anhydrous glycerin. Nematologica 4 (1): 67–69.

Ssaweljev S. 1912. Zur Kenntnis der freilebenden Nematoden des Kolafjords und des Relictensee Mogilnoje. Travaux de la Société Impériale des Naturalistes de Saint-Petersbourg 42: 108–126.

Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (9): 1312–1313. https://doi.org/10.1093/bioinformatics/btu033

Tchesunov A.V 2014. Order Chromadorida Chitwood, 1933. In: Schmidt-Raesa A. (ed.) Handbook of Zoology, Gastrotricha, Cycloneuralia and Gnathifera. Volume 2: 373–398. De Gruyter, Hamburg. https://doi.org/10.1515/9783110274257.373

Vitiello P. 1971. Nématodes nouveaux des vases terrigènes cotières des côtes provençales. Téthys 2 (4): 859–875.

Zograf J., Trebukhova Y. & Pavlyuk O. 2015. New deep-sea free-living marine nematodes from the Sea of Japan: the genera Siphonolaimus and Halichoanolaimus (Nematoda: Chromadorea) with keys to species identifications. Zootaxa 3911 (1): 63–80. https://doi.org/10.11646/zootaxa.3911.1.3

Published
2020-08-14
How to Cite
Ahmed, M., Boström, S., & Holovachov, O. (2020). Revision of the genus Cobbionema Filipjev, 1922 (Nematoda, Chromadorida, Selachinematidae). European Journal of Taxonomy, (702). https://doi.org/10.5852/ejt.2020.702
Section
Zoology