Niphargus dancaui sp. nov. (Amphipoda, Niphargidae) – a new species thriving in sulfidic groundwaters in southeastern Romania
Abstract
References
Altermatt F., Alther R., Fišer C., Jokela J., Konec M., Küry D., Mächler E., Stucki P. & Westram A. 2014. Diversity and distribution of freshwater amphipods in Switzerland (Crustacea: Amphipoda). PLOS ONE 9: e110328. http://dx.doi/org/10.1371/journal.pone.0110328
Bah T. 2011. Inkscape: Guide to a Vector Drawing Program (4th ed.). Prentice Hall, Boston, MA.
Benson D.A., Clark K., Karsch-Mizrachi I., Lipman, D.J., Ostell J. & Sayers E.W. 2015. GenBank. Nucleic Acids Research. 43: D30–D35. http://dx.doi.org/10.1093/nar/gku1216
Dancău D. 1964. Noi contribuţii la studiul amfipodelor subterane Niphargus dobrogicus n. sp. Lucrările Institutului de Speologie “Emil Racoviţă” 3: 397–403.
Dancău D. 1970. Sur un nouvel amphipode souterrain de Roumanie, Pontoniphargus racovitzai n.g., n.sp. In: Orghidan T. & Dumitresco M. (eds) Livre du Centenaire. Emile G. Racovitza 1868–1968: 275–285. Académie de la République Socialiste de Roumanie, Bucarest.
Esmaeili-Rineh S., Sari A., Delić T., Moškrič A. & Fišer C. 2015. Molecular phylogeny of the subterranean genus Niphargus (Crustacea: Amphipoda) in the Middle East: a comparison with European niphargids. Zoological Journal of the Linnean Society 175 (4): 812–826. http://dx.doi.org/10.1111/zoj.12296
Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (4): 783–791.
Fišer C. 2012. Niphargus: a model system for evolution and ecology. In: Culver D.C. & White W.B. (eds) Encyclopedia of Caves: 555–564. Academic Press, Amsterdam.
Fišer C., Sket B. & Trontelj P. 2008. A phylogenetic perspective on 160 years of troubled taxonomy of Niphargus (Crustacea: Amphipoda). Zoologica Scripta 37: 665–680. http://dx.doi/org/10.1111/j.1463-6409.2008.00347.x
Fišer C., Trontelj P., Luštrik R. & Sket B. 2009. Toward a unified taxonomy of Niphargus (Crustacea: Amphipoda): a review of morphological variability. Zootaxa 2061: 1–22.
Fišer C., Konec M., Kobe Z., Osanič M., Gruden P. & Potočnik H. 2010. Conservation problems with hypothelminorheic Niphargus species (Amphipoda: Niphargidae). Aquatic Conservation: Marine and Freshwater Ecosystems 20 (5): 602–604. http://dx.doi.org/10.1002/aqc.1119
Fišer C., Zagmajster M. & Zakšek V. 2013. Coevolution of life history traits and morphology in female subterranean amphipods. Oikos 122 (5): 770–778. http://dx.doi.org/10.1111/j.1600-0706.2012.20644.x
Fišer C., Luštrik R., Sarbu S., Flot J.-F., Trontelj P. 2015. Morphological evolution of coexisting amphipod species pairs from sulfidic caves suggests competitive interactions and character displacement, but no environmental filtering and convergence. PLOS ONE 10: 1–13. http://dx.doi.org/10.1371/journal.pone.0123535
Flot J.-F. 2010. Vers une taxonomie moléculaire des amphipodes du genre Niphargus : exemples d’utilisation de séquences d’ADN pour l’identification des espèces. Bulletin de la Société des Sciences Naturelles de l’Ouest de la France 32: 62–68.
Flot J.-F., Wörheide G. & Dattagupta S. 2010. Unsuspected diversity of Niphargus amphipods in the chemoautotrophic cave ecosystem of Frasassi, central Italy. BMC Evolutionary Biology 10: 171. http://dx.doi.org/10.1186/1471-2148-10-171
Flot J.-F., Bauermeister J., Brad T., Hillebrand-Voiculescu A., Sarbu S.M. & Dattagupta S. 2014. Niphargus-Thiothrix associations may be widespread in sulphidic groundwater ecosystems: evidence from southeastern Romania. Molecular Ecology 23 (6): 1405–1417. http://dx.doi.org/10.1111/mec.12461
Forti P., Galdenzi S. & Sarbu S.M. 2002. The hypogenic caves: a powerful tool for the study of seeps and their environmental effects. Continental Shelf Research 22: 2373–2386.
Gibert J. 2001. Basic attributes of groundwater ecosystems. In: Griebler C., Danielopol D.L. Gibert J., Nachtnebel H.P. & Notenboom J. (eds). Groundwater Ecology. A Tool for Management of Water Resources: 39–54. Office for Official Publications of the European Communities, Luxembourg.
Hartke T.R., Fišer C., Hohagen J., Kleber S., Hartmann R. & Koenemann S. 2011. Morphological and molecular analyses of closely related species in the stygobiontic genus Niphargus (Amphipoda). Journal of Crustacean Biology 31: 701–709. http://dx.doi/org/10.1651/10-3434.1
Hekmatara M., Zakšek V., Heidari Baladehi M. & Fišer, C. 2013. Two new species of Niphargus (Crus-tacea: Amphipoda) from Iran. Journal of Natural History 47 (21–22): 1421–1449. http://dx.doi.org/10.1080/00222933.2012.743616
Hudec I. & Mock A. 2014. Niphargus plurispinosus sp. n. (Crustacea, Amphipoda), a stygophile and hypotelminorheic representative from Central Europe. Subterranean Biology 13: 65–87. http://dx.doi.org/10.3897/subtbiol.13.6531
Karaman S. 1952. Podrod Stygoniphargus u Sloveniji i Hrvatskoj. Prirodoslovna Istraživanja 25: 5–38.
Karaman G.S., Borowsky B. & Dattagupta S. 2010. Two new species of the genus Niphargus Schiödte, 1849 (Amphipoda, fam. Niphargidae) from the Frasassi cave system in Central Italy. Zootaxa 2439: 35–52.
Katoh K. & Standley D.M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. http://dx.doi.org/10.1093/molbev/mst010
Lanave C., Preparata G., Saccone C. & Serio G. 1984. A new method for calculating evolutionary substitution rates. Journal of Molecular Evolution 20: 86–93. http://dx.doi.org/10.1007/BF02101990
Latella L., Di Russo C., De Pasquale L., Dell’Anna L., Nardi G. & Rampini M. 1999. Preliminary investigations on a new sulfurous cave in Central Italy. Mémoires de Biospéologie 26: 131–135.
Lefébure T., Douady C.J., Gouy M., Trontelj P., Briolay J. & Gibert J. 2006 Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments. Molecular Ecology 15 (7): 1797–1806. http://dx.doi.org/10.1111/j.1365-294X.2006.02888.x
Lefébure T., Douady C.J., Malard F. & Gibert J. 2007 Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis). Molecular Phylogenetics and Evolution 42 (3): 676–686. http://dx.doi.org/10.1016/j.ympev.2006.08.020
McInerney C.E., Maurice L., Robertson A.L., Lee R.F.D.K., Arnscheidt J., Venditti C., Dooley J.S.G., Mathers T., Matthijs S., Eriksson K., Proudlove G.S. & Hänfling B. 2014. The ancient Britons: groundwater fauna survived extreme climate change over tens of millions of years across NW Europe. Molecular Ecology 23 (5): 1153–1166. http://dx.doi.org/10.1111/mec.12664
Ntakis A., Anastasiadou C., Zakšek V. & Fišer C. 2015. Phylogeny and biogeography of three new species of Niphargus (Crustacea: Amphipoda) from Greece. Zoologischer Anzeiger 255: 32–46. http://dx.doi.org/10.1016/j.jcz.2015.02.002
Price M.N., Dehal P.S. & Arkin AP. 2010. FastTree 2 – Approximately maximum-likelihood trees for large alignments. PLoS ONE 5: e9490. http://dx.doi.org/10.1371/journal.pone.0009490
Rejic M. 1956. Dve novi vrsti nifargid iz Slovenije. Biološki Vestnik 5: 79–84.
Sarbu S.M. & Popa R. 1992. A unique chemoautotrophically based cave ecosystem. In: Camacho A.I. (ed.) The Natural History of Biospeleology: 637–666. Monograph of the National Museum of Natural Sciences 7, Madrid, Spain.
Sarbu S.M., Kane T.C. & Kinkle B.K. 1996. A chemoautotrophically based cave ecosystem. Science 272: 1953–1955. http://dx.doi.org/10.1126/science.272.5270.1953
Sarbu S.M., Galdenzi S., Menichetti M. & Gentile G. 2000. Geology and biology of the Frasassi caves in central Italy: an ecological multi-disciplinary study of a hypogenic underground karst system. In: Wilkens H., Culver D.C. & Humphreys W.F. (eds) Subterranean Ecosystems: 359–378. Elsevier Academic Press, Amsterdam.
Sket B. 1974. Niphargus stygius (Schiödte) (Amphipoda, Gammaridae) — die Neubeschreibung des Renerotypus, Variabilität, Verbreitung und Biologie der Art, I. Biološki Vestnik 22: 91–103.
Sket B. & Velkovrh F. 1981. Postojnsko-Planinski jamski sistem kot model za preučevanje onesnaženja podzemeljskih voda. Naše Jame 22: 27–44.
Stoch F. 1998. Revision of the Niphargus stygius-group in Venetia and Trentino (northeastern Italy), with description of three new species (Crustacea, Amphipoda, Niphargidae). Bollettino del Museo Civico di Storia Naturale di Verona 22: 229–274.
Švara V., Delić T., Raða T. & Fišer C. 2015. Molecular phylogeny of Niphargus boskovici (Crustacea: Amphipoda) reveals a new species from epikarst. Zootaxa 3994: 354–376. http://dx.doi.org/10.11646/zootaxa.3994.3.2
Tamura K., Stecher G., Peterson D., Filipski A. & Kumar S. 2013. MEGA6: Molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30: 2725–2729. http://dx.doi.org/10.1093/molbev/mst197
Tavaré S. 1986. Some probabilistic and statistical problems in the analysis of DNA sequences. Lectures on Mathematics in the Life Sciences 17: 57–86.
Trontelj P., Douady C.J., Fišer C., Gibert J., Gorički Š., Lefébure T., Sket B. & Zakšek V. 2009. A molecular test for cryptic diversity in ground water: how large are the ranges of macrostygobionts? Freshwater Biology 54 (4): 727–744. http://dx.doi.org/10.1111/j.1365-2427.2007.01877.x
Trontelj P., Blejec A. & Fišer C. 2012 Ecomorphological convergence of cave communities. Evolution 66 (12): 3852–3865. http://dx.doi.org/10.1111/j.1558-5646.2012.01734.x
Väinölä R., Witt J., Grabowski M., Bradbury J., Jazdzewski K. & Sket B. 2008. Global diversity of amphipods (Amphipoda; Crustacea) in freshwater. Hydrobiologia 595: 241–255. http://dx.doi.org/10.1007/s10750-007-9020-6
Villesen P. 2007. FaBox: an online toolbox for FASTA sequences. Molecular Ecology Notes 7: 965–968. http://dx.doi.org/10.1111/j.1471-8286.2007.01821.x
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