Two new cryptic species of Hemidactylus (Reptilia: Gekkonidae) allied to H. treutleri from Telangana, India

Abstract

We describe two new species of the genus Hemidactylus Goldfuss, 1820, namely Hemidactylus cairnicola sp. nov. and H. koyaorum sp. nov., from Nalgonda and Warangal districts of Telangana State, India, respectively, based on an integrative assessment of external morphology and mitochondrial NADH dehydrogenase subunit 2 (ND2) gene sequences. Both taxa are assigned to the Hemidactylus brookii group and belong to the murrayi clade, within which they show closest affinity to H. treutleri Mahony, 2009. Mitochondrial sequence divergence reveals substantial genetic differentiation from H. treutleri, with the species of Nalgonda exhibiting an uncorrected pairwise distance of 9.5–14.5%, and the species of Warangal differing by 7.0–13.5%. The two newly described species are also genetically distinct from each other, showing an uncorrected p-distance of 9.5–10.0%. These levels of divergence, in conjunction with consistent morphological differences, support the recognition of both taxa as distinct species.

References

Adhikari O.D., Achyuthan N., Kumar G.C., Khot R.V., Shreeram M. & Ganesh S. 2022. Two new species of Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from the rocky outcrops of the Deccan plateau, peninsular India. Zootaxa 5129 (2): 227–249. https://doi.org/10.11646/zootaxa.5129.2.4

Agarwal I., Giri V.B. & Bauer A.M. 2011. A new cryptic rock-dwelling Hemidactylus (Squamata: Gekkonidae) from south India. Zootaxa 2765 (1): 21–37. https://doi.org/10.11646/zootaxa.2765.1.2

Agarwal I., Bauer A.M., Giri V.B. & Khandekar A. 2019. An expanded ND2 phylogeny of the brookii and prashadi groups with the description of three new Indian Hemidactylus Oken (Squamata: Gekkonidae).Zootaxa 4619 (3): 431–458. https://doi.org/10.11646/zootaxa.4619.3.2

Agarwal I., Thackeray T. & Khandekar A. 2020. Geckos in the granite: two new geckos (Squamata: Gekkonidae) from rocky, scrub habitats in Rishi Valley, Andhra Pradesh, India. Zootaxa 4838 (4): 451–474. https://doi.org/10.11646/zootaxa.4838.4.1

Agashe M., Šmíd J., Janák V., Biswas A. & Karanth K.P. 2025. Twin cradles of diversity: parallel in-situ radiations in India and Africa drive the evolution of Hemidactylus geckos. Journal of Biogeography 52 (8): e15165. https://doi.org/10.1111/jbi.15165

Bansal R. & Karanth K.P. 2010. Molecular phylogeny of Hemidactylus geckos (Squamata: Gekkonidae) of the Indian subcontinent reveals a unique Indian radiation and an Indian origin of Asian house geckos. Molecular Phylogenetics and Evolution 57 (1): 459–465. https://doi.org/10.1016/j.ympev.2010.06.008

Bauer A.M., Jackman T.R., Greenbaum E., Giri V.B. & de Silva A. 2010. South Asia supports a major endemic radiation of Hemidactylus geckos. Molecular Phylogenetics and Evolution 57 (1): 343–352. https://doi.org/10.1016/j.ympev.2010.06.014

Carranza S. & Arnold E.N. 2006. Systematics, biogeography, and evolution of Hemidactylus geckos (Reptilia: Gekkonidae) elucidated using mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 38 (2): 531–545. https://doi.org/10.1016/j.ympev.2005.07.012

Chaitanya R., Agarwal I., Lajmi A. & Khandekar A. 2019. A novel member of the Hemidactylus brookii complex (Squamata: Gekkonidae) from the Western Ghats of Maharashtra, India. Zootaxa 4646 (2): 236–250. https://doi.org/10.11646/zootaxa.4646.2.2

Chan K.O. & Grismer L.L. 2022. GroupStruct: An R package for allometric size correction. Zootaxa 5124 (4): 471–482. https://doi.org/10.11646/zootaxa.5124.4.4

Das S., Pal S., Siddharth S., Palot M.J., Deepak V. & Narayanan S. 2022. A new species of large-bodied Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from the Western Ghats of India. Vertebrate Zoology 72: 81–94. https://doi.org/10.3897/vz.72.e76046

Drummond A.J., Suchard M.A., Xie D., Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969–1973. https://doi.org/10.1093/molbev/mss075

Giri V.B. 2008. A new rock dwelling Hemidactylus (Squamata: Gekkonidae) from Maharashtra, India. Hamadryad 32: 25–33.

Giri V.B. & Bauer A.M. 2008. A new ground-dwelling Hemidactylus (Squamata: Gekkonidae) from Maharashtra, with a key to the Hemidactylus of India. Zootaxa 1700 (1): 21–34. https://doi.org/10.11646/zootaxa.1700.1.2

Giri V.B., Bauer A.M., Vyas R. & Patil S. 2009. New species of rock-dwelling Hemidactylus (Squamata: Gekkonidae) from Gujarat, India. Journal of Herpetology 43 (3): 385–393. https://doi.org/10.1670/08-137R1.1

Kapli P., Lutteropp S., Zhang J., Kobert K., Pavlidis P., Stamatakis A. & Flouri T. 2017. Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics 33: 1630–1638. https://doi.org/10.1093/bioinformatics/btx025

Khandekar A., Thackeray T., Pawar S. & Agarwal I. 2020. A new medium-bodied rupicolous Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from the Sirumalai massif, Tamil Nadu, India. Zootaxa 4852 (1): 83–100. https://doi.org/10.11646/zootaxa.4852.1.4

Khandekar A., Thackeray T. & Agarwal I. 2021. A cryptic new species of rupicolous Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) allied to H. aaronbaueri Giri, 2008 from the northern Western Ghats of Maharashtra, India. Zootaxa 5020 (3): 434–456. https://doi.org/10.11646/zootaxa.5020.3.2

Khandekar A., Thackeray T., Mariappan R., Gangalmale S., Waghe V., Pawar S. & Agarwal I. 2023. A remarkable new species of gecko (Squamata: Gekkonidae: Hemidactylus) from scrublands at the southern tip of India. Vertebrate Zoology 73: 433–450. https://doi.org/10.3897/vz.73.e101871

Kumar G.C., Srinivasulu A. & Srinivasulu C. 2022. Redescription of Hemidactylus giganteus Stoliczka, 1871 with the description of three new allied species (Squamata: Gekkonidae: Hemidactylus Goldfuss, 1820) from peninsular India. Zootaxa 5115 (3): 301–341. https://doi.org/10.11646/zootaxa.5115.3.1

Kumar S., Stecher G., Tamura K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution 33: 870–1874. https://doi.org/10.1093/molbev/msw054

Lajmi A., Giri V.B. & Karanth K.P. 2016. Molecular data in conjunction with morphology help resolve the Hemidactylus brookii complex (Squamata: Gekkonidae). Organisms Diversity & Evolution 16: 659–677. https://doi.org/10.1007/s13127-016-0271-9

Lajmi A., Bansal R., Giri V. & Karanth P. 2019. Phylogeny and biogeography of the endemic Hemidactylus geckos of the Indian subregion suggest multiple dispersals from Peninsular India to Sri Lanka. Zoological Journal of the Linnean Society 186: 286–301. https://doi.org/10.1093/zoolinnean/zly047

Lajmi A., Giri V.B., Singh T. & Agarwal I. 2020. Two new species of yellow-tailed Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from rocky outcrops on the Telangana Plateau, India. Zootaxa 4895 (4): 483–504. https://doi.org/10.11646/zootaxa.4895.4.2

Leary S., Underwood W., Anthony R. & Cartner S. 2013. AVMA Guidelines for the Euthanasia of Animals, 2013 Edition. American Veterinary Medical Association, Schaumburg.

Macey J.R., Larson A., Ananjeva N.B., Fang Z. & Papenfuss T.J. 1997. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Molecular Biology and Evolution 14 (1): 91–104. https://doi.org/10.1093/oxfordjournals.molbev.a025706

Mahony S. 2009. A new species of Gecko of the genus Hemidactylus (Reptilia: Gekkonidae) from Andhra Pradesh, India. Russian Journal of Herpetology 16 (1): 27–34. https://doi.org/10.30906/1026-2296-2009-16-1-27-34

Mahony S. 2011. Taxonomic revision of Hemidactylus brookii Gray: a re-examination of the type series and some Asian synonyms, and a discussion of the obscure species Hemidactylus subtriedrus Jerdon (Reptilia: Gekkonidae). Zootaxa 3042 (1): 37–67. https://doi.org/10.11646/zootaxa.3042.1.4

Mirza Z.A. & Raju D. 2017. A new rupicolous species of gecko of the genus Hemidactylus Oken, 1817 from the Satpura Hills, Central India. Amphibian & Reptile Conservation 11 (1): 51–71 (e137).

Mohapatra P.P., Agarwal I., Mohalik R.K., Dutta S.K. & Khandekar A. 2023. Hemidactylus paucifasciatus (Squamata: Gekkonidae), a new species of large-bodied, tuberculate gecko from Northern Odisha, India. Zootaxa 5301 (3): 365–382. https://doi.org/10.11646/zootaxa.5301.3.3

Mohapatra P.P., Ray S., Das A.K., Bhupathi B., Sarkar V., Mohalik R.K., Nair M.V. & Dutta S.K. 2025a. A new species of Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from Northern Eastern Ghats, Odisha, India. Herpetozoa 38: 365–378. https://doi.org/10.3897/herpetozoa.38.e175753

Mohapatra P.P., Ray S., Bhupathi B., Deuti K. & Sethy P.G.S. 2025b. Checklist of Fauna of India: Reptilia. Version 2.0. Zoological Survey India, Kolkata. https://doi.org/10.26515/Fauna/2/2025/Chordata:Reptilia

Narayana B.L., Surender G. & Rao V.V. 2014. Hemidactylus treutleri from Eastern Ghats, Andhra Pradesh, India. Taprobanica 6 (1): 55. https://doi.org/10.4038/tapro.v6i1.7088

Narayanan S., Christopher P., Raman K., Mukherjee N., Prabhu P., Lenin M., Vimalraj S. & Deepak V. 2023. A new species of rock-dwelling Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from the southern Eastern Ghats. Vertebrate Zoology 73: 499–512. https://doi.org/10.3897/vz.73.e104494

Oksanen J., Blanchet G., Kindt R., Legendre P., Minchin P.R. & O’Hara R.B. 2020. vegan: Community ecology package. R package version 2.0-10. Available from http://cran.r-project.org/package=vegan [accessed 7 Aug. 2026].

Pal S. & Mirza Z.A. 2022. A new species of large-bodied gecko of the genus Hemidactylus Goldfuss, 1820 from southern Western Ghats of Tamil Nadu, India. Journal of Bombay Natural History Society 119. https://doi.org/10.17087/jbnhs/2022/v119/167364

Patel H., Thackeray T., Vyas R. & Mirza Z.A. 2026. A new species of Hemidactylus Goldfuss, 1820 (Squamata: Sauria: Gekkonidae) of the H. persicus complex from Aravalli hills, India. Zootaxa 5759 (5): 526–542. https://doi.org/10.11646/zootaxa.5759.5.2

Puillandre N., Brouillet S. & Achaz G. 2021. ASAP: assemble species by automatic partitioning. Molecular Ecology Resources 21: 609–620. https://doi.org/10.1111/1755-0998.13281

R Core Team. 2021. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.r-project.org

Rodgers W.A., Panwar H.S. & Mathur V.B. 2000. Wildlife Protected Area Network in India: A Review (Executive Summary). Wildlife Institute of India, Dehradun.

Sayyed A., Kirubakaran S., Khot R., Adhikari O., Sayyed A., Sayyed M., Purkayastha J., Deshpande S. & Sulakhe S. 2023. A new species of the genus Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from Tamil Nadu, India. Asian Journal of Conservation Biology 12 (1): 100–110. https://doi.org/10.53562/ajcb.82582

Sayyed A., Khot R. & Purkayastha J. 2025. A new tuberculate house gecko species (Squamata: Gekkonidae: Hemidactylus) from the northern Western Ghats of Maharashtra, India. Zootaxa 5583 (2): 293–308. https://doi.org/10.11646/zootaxa.5583.2.4

Skalski J.R., Richins S.M. & Townsend R.L. 2018. A statistical test and sample size recommendations for comparing community composition following PCA. PLoS ONE 13: e0206033. https://doi.org/10.1371/journal.pone.0206033

Thompson J.D., Higgins D.G. & Gibson T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (22): 4673–4680. https://doi.org/10.1093/nar/22.22.4673

Thorpe R.S. 1975. Quantitative handling of characters useful in snake systematics with particular reference to interspecific variation in the ringed snake Natrix natrix (L.). Biological Journal of the Linnean Society 7: 27–43. https://doi.org/10.1111/j.1095-8312.1975.tb00732.x

Thorpe R.S. 1983. Phylogenetic analysis of range expansion in the grass snake: Reticulate evolution: Primary and secondary contact zones. In: Felsenstein J. (ed.) Numerical Taxonomy: Proceedings of a NATO Advanced Study Institute: 464–468. NATO Advanced Study Institute Series G (Ecological Sciences), No. 1. Springer, Berlin / Heidelberg / New York.

Uetz P., Freed P., Aguilar R., Reyes F. & Hošek J. (eds). 2026. Reptile database. Available from https://reptile-database.reptarium.cz/ [accessed 21 Feb. 2026].

Venables W.N. & Ripley B.D. 2002. Modern Applied Statistics with S. 4th Edition. Springer, New York.

Wickham H. 2009. ggplot2: Elegant Graphics for Data Analysis. Springer, New York.

Wong T.K., Ly-Trong N., Ren H., Demotte P., Baños H., Roger A.J., Susko E., Bielow C., Maio N.D., Goldman N., Hahn M.W., Reis M.D., Vinh L.S., Huttley G., Lanfear R., Minh B.Q. 2026. IQ-TREE 3: Phylogenomic inference software using complex evolutionary models. Molecular Biology and Evolution 43: msag117. https://doi.org/10.1093/molbev/msag117

Zhang J., Kapli P., Pavlidis P. & Stamatakis A. 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29 (22): 2869–2876. https://doi.org/10.1093/bioinformatics/btt499

Published
2026-09-30
How to Cite
Bhupathi, B., Ray, S., Narayana, B. L., Balan, A., Jaiswal, D., & Mohapatra, P. P. (2026). Two new cryptic species of Hemidactylus (Reptilia: Gekkonidae) allied to H. treutleri from Telangana, India. European Journal of Taxonomy, 1102(1), 1–29. https://doi.org/10.5852/ejt.2026.1102.3333
Section
Research article