A DNA barcode-based survey of terrestrial arthropods in the Society Islands of French Polynesia: host diversity within the SymbioCode Project
Abstract
References
Anisimova M. & Gascuel O. 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Systematic Biology 55: 539–552.
Bailly-Bechet M., Simoes P., Szöllősi G., Mialdea G., Sagot M.-F. & Charlat S. In press. How long does Wolbachia remain on board? Molecular Biology and Evolution.
Check E. 2006. Treasure island: pinning down a model ecosystem. Nature 439: 378–379. http://dx.doi.org/10.1038/439378a
Dierkens M. & Charlat S. 2009. Contribution à la connaissance des araignées des îles de la Société (Polynésie française). Revue Arachnologique 17: 63–81.
Dierkens M. & Ramage T. 2016. Deuxième contribution à la connaissance des araignées de Polynésie française. Bulletin mensuel de la Société Linnéenne de Lyon 85: 134–172.
Fairmaire L.M.H. 1849. Essai sur les Coléoptères de la Polynésie. Revue et Magasin de Zoologie 2: 277–291, 352–365, 410–422, 445–460, 504–516, 550–559.
Fairmaire L.M.H. 1850. Essai sur les Coléoptères de la Polynésie. Revue et Magasin de Zoologie 2: 50–64, 115–122, 181–185.
Folmer O., Black M., Hoeh W., Lutz R. & Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294–299.
Gillespie R.G. & Roderick G.K. 2002. Arthropods on islands: colonization, speciation, and conservation. Annual Review of Entomology 47: 595–632.
Gressitt J.L. 1956. Some distribtion patterns of Pacific island faunae. Systematic Zoology 5: 11–47.
Gressitt J.L. & Gressitt M.K. 1962. An improved Malaise trap. Pacific Insects 4: 87–90.
Han M.V. & Zmasek C.M. 2009. phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics 10: e356. http://dx.doi.org/10.1186/1471-2105-10-356
Hurst G.D. & Jiggins F.M. 2005. Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society B 272: 1525–1534.
Huson D.H. & Scornavacca C. 2012. Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Systematic Biology 61: 1061–1067. http://dx.doi.org/10.1093/sysbio/sys062
Katoh K. & Standley D.M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. http://dx.doi.org/10.1093/molbev/mst010
Kearse M., Moir R., Wilson A., Stones-Havas S., Cheung M., Sturrock S., Buxton S., Cooper A., Markowitz S., Duran C., Thierer T., Ashton B., Meintjes P. & Drummond A. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647–1649. http://dx.doi.org/10.1093/bioinformatics/bts199
Lamarre G.P.A., Molto Q., Fine P.V.A. & Baraloto C. 2012. A comparison of two common flight interception traps to survey tropical arthropods. ZooKeys 216: 43–55. http://dx.doi.org/10.3897/zookeys.216.3332
Meier R., Shiyang K., Vaidya G. & Ng P.K.L. 2006. DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Systematic Biology 55: 715–728. http://dx.doi.org/10.1080/10635150600969864
Miller S. 1996. Biogeography of Pacific insects and other terrestrial invertebrates: a status report. In: Keast A. & Miller S. (eds) The Origin and Evolution of Pacific Island Biotas, New Guinea to Eastern Polynesia: Patterns and Processes: 463–475. Academic Publishers, Amsterdam.
Price M.N., Dehal P.S. & Arkin A.P. 2010. FastTree 2 - Approximately maximum-likelihood trees for large alignments. PLoS ONE 5 (3): e9490. http://dx.doi.org/10.1371/journal.pone.0009490
Ramage T. In press. Checklist of the terrestrial and freshwater arthropods of French Polynesia (Chelicerata; Myriapoda; Crustacea; Hexapoda). Zoosystema.
Ramage T. & Gourvès J. 2016. Un nouveau Scutelleridae pour la Polynésie française, Calliphara bifasciata White, 1839 (Hemiptera). Bulletin de la Société Entomologique de France, in press.
Ramage T. & Kimsey L.S. 2015. The Aculeata of French Polynesia. IV. First record of Chrysis angolensis (Hymenoptera, Chrysididae). Bulletin de la Société Entomologique de France 120: 209–211.
Ramage T., Charlat S. & Jacq F. 2015. The Aculeata of French Polynesia. III. Sphecidae, with the record of three new species for the Society Islands (Hymenoptera). Bulletin de la Société Entomologique de France 120: 157–163.
Ratnasingham S. & Hebert P.D.N. 2013. A DNA-based registry for all animal species: the Barcode Index Number (BIN) system. PLoS ONE 8 (7): e66213. http://dx.doi.org/10.1371/journal.pone.0066213
Rousse O., Ramage T. & Charlat S. In prep. Ichneumonid wasps of French Polynesia: synopsis, illustrated key, and description of 10 new species.
Whittaker R. & Fernández-Palacios J. 2009. Island Biogeography. Ecology, Evolution, and Conservation. Second Edition. Oxford University Press, Oxford.
Wilson J.J., Rougerie R., Schonfeld J., Janzen D.H., Hallwachs W., Hajibabaei M., Kitching I.J., Haxaire J. & Hebert P.D. 2011. When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths. BMC Ecology 11: e18. http://dx.doi.org/10.1186/1472-6785-11-18
Creative Commons Copyright Notices
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License (CC BY 4.0) that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are NOT ALLOWED TO post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to taxonomic issues.